miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86103948|gb|BB915157.1|BB915157 CTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGAAGAAAAACTGAATGGGTTATGCATGAATTTCGCATTGAGGGTCCT
CATGGCCCTCCTAAAATTTCTTCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTAC
AAAACCAAGCATGGGTAGTTGCTATGATGACACAGGATCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTG
ATCAAGCTCAATTCCATACAGATGAATTTGAGCAAGTGCCCTGCTTCTCCATTTTTTCTCAAAACCAAACAAACCCTATC
TTCAACCATATAACAACCAATAATATGGAACCAAAATTACCTATATCCAACAATAACAATGCAACTACATTTGGAGAAGC
ACCTTATAGTTTAGACCCTTTATCATGTGATAGAAAAGTTTTAAAAGCTGTTTTGAGTCAACTCTCAAAAATGGAAAGAA
ACCCTATTAATAATCAAATTCTAAAAGGGTCATCACCAAGCTTAGGAGAAGGAAGTTCTGAAAGTTACTTATCTGATGTG
GGTATGCCCCACATGTGGA




Most similar to sp|Q84TE6|NAC22_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22
           OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2
          Length = 324

 Score =  162 bits (411), Expect = 1e-39
 Identities = 91/172 (52%), Positives = 120/172 (69%), Gaps = 14/172 (8%)
 Frame = +3

Query: 3   LVFYQGRAPKGRKTEWVMHEFRIEGPHGPP--KISSSKEDWVLCRVFYKNRE-VATKPSM 173
           LVFYQGRAP+GRKT+WVMHEFR++G H PP   +SS KEDWVLCRVF+KN E V  + +M
Sbjct: 123 LVFYQGRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEGVICRDNM 182

Query: 174 GSCYDDTGSSSLPALMDSYISFDQ--AQFHTDEF-----EQVPCFSIFSQNQTNPIFNHI 332
           GSC+D+T S+SLP LMD YI+FDQ  + + +D+      E VPCFS  SQNQT  + +++
Sbjct: 183 GSCFDETASASLPPLMDPYINFDQEPSSYLSDDHHYIINEHVPCFSNLSQNQT--LNSNL 240

Query: 333 TTNNMEPKLPISNNNNATTFGEAPYSLDPL----SCDRKVLKAVLSQLSKME 476
           T +  E K+P  N N   T G A  +L  L    S D+ VL+A+LSQL+K++
Sbjct: 241 TNSVSELKIPCKNPNPLFTGGSASATLTGLDSFCSSDQMVLRALLSQLTKID 292